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Similarity detection seeks to identify similar, but distinct items over multivariate datasets. Often, similarity cannot be defined computationally, leading to a need for visual analysis, such as in cases with ensemble, computational, patient cohort, or geospatial data. In this work, we empirically evaluate the effectiveness of common visual encodings for multivariate data in the context of visual similarity detection. We conducted a user study with 40 participants to measure similarity detection performance and response time under moderate scale (16 items) and large scale (36 items). Our analysis shows that there are significant differences in performance between encodings, especially as the number of items increases. Surprisingly, we found that juxtaposed star plots outperformed superposed parallel coordinate plots. Furthermore, color-cues significantly improved response time, and attenuated error at larger scales. In contrast to existing guidelines, we found that filled star plots (Kiviats) outperformed other encodings in terms of scalability and error.more » « less
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Trabucco, Juan Trelles; Floricel, Carla; Arighi, Cecilia; Shatkay, Hagit; Raciti, Daniela; Ringwald, Martin; Marai, G Elisabeta (, IEEE Xplore)Biocuration is the process of analyzing biological or biomedical articles to organize biological data into data repositories using taxonomies and ontologies. Due to the expanding number of articles and the relatively small number of biocurators, automation is desired to improve the workflow of assessing articles worth curating. As figures convey essential information, automatically integrating images may improve curation. In this work, we instantiate and evaluate a first-in-kind, hybrid image+text document search system for biocuration. The system, MouseScholar, leverages an image modality taxonomy derived in collaboration with biocurators, in addition to figure segmentation, and classifiers components as a back-end and a streamlined front-end interface to search and present document results. We formally evaluated the system with ten biocurators on a mouse genome informatics biocuration dataset and collected feedback. The results demonstrate the benefits of blending text and image information when presenting scientific articles for biocuration.more » « less
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Trabucco, Juan Trelles; Li, Pengyuan; Arighi, Cecilia; Shatkay, Hagit; Marai, G. Elisabeta (, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM))
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